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  • Fusion transcripts
1. FusionSeq
Identifies fusion transcripts from paired end RNA-Seq data.
標(biāo)簽：Fusion transcripts,?RNA-Seq,Fusion genes
2. Trans-ABySS
Trans-ABySS is a software package that is designed to analyze ABySS-assembled whole-genome shotgun transcriptome data.
標(biāo)簽：RNA-Seq,?SNP discovery,?Fusion genes,?InDel discovery,?Fusion transcripts
3. DeFuse
deFuse is a software package for gene fusion discovery using RNA-Seq data. The software uses clusters of discordant paired end alignments to inform a split read alignment analysis for finding fusion boundaries. The software also employs a number of heuristic filters in an attempt to red...
標(biāo)簽：Fusion genes,?RNA-Seq,?Fusion transcripts
4. TopHat-Fusion
Detection of fusion genes in RNA-Seq data
標(biāo)簽：Fusion transcripts
5. ShortFuse
Method for using paired-end reads to find fusion transcripts without requiring unique mappings or additional single read sequencing
標(biāo)簽：Fusion transcripts
6. ChimeraScan
Identifies chimaeric transcripts in RNA-Seq data
標(biāo)簽：Fusion transcripts
7. FusionMap
Detects fusion events in both single- and paired-end datasets from either RNA-Seq or gDNA-Seq studies and characterize fusion junctions at base-pair resolution.
標(biāo)簽：Fusion genes,?Fusion transcripts
8. ViralFusionSeq
Accurately discover viral integration events and fusion transcripts by the use of soft-clipping information, read-pair analysis, and targeted de novo assembly
標(biāo)簽：Genomics,?Fusion genes,?Fusion transcripts,?Viral genomics
9. FusionHunter
Identifies gene fusions in RNA-Seq data
標(biāo)簽：RNA-Seq,?Fusion transcripts
10. CRAC
CRAC is a mapping software specialized for RNA-Seq data. It detects mutations, indels, splice or fusion junctions in each single read. We propose a novel way of analyzing reads that integrates genomic locations and local coverage, and delivers all above mentioned predictions in a singl...
標(biāo)簽：Mapping,?RNA Seq analysis,RNA-Seq Alignment,?Alternative Splicing,?Fusion genes,?Fusion transcripts,?SNP discovery,InDel discovery